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  • What is new

What is new

 
Here you find the updates about the changes made in this manual.
 
  • Manual Version 24.9.1 - November 2024
  • Export to Excel and CSV allows to order the position of the exported data.
  • Stock management, scrollers (horizontal and vertical) are now present when the box-size is too big for the screen.
  • Minor bug fixes.
 
  • Manual Version 24.9 - November 2024
  • Scheduler tool has been removed. This tool has been reviewed and will be present in the future web version.
  • Trace file edition new features:
  • Ability to create list of primers (saved per user only). Primer list #22.
  • Possibility to search for them (primers) in any of the trace files and auto selection. Find primers #5.
  • Then possibility to remove all the nucleotides on the right or on the left of the selection including the selection. Edit options #20 & #21.
  • Possibility to select several genertic codes for the translation of DNA to proteins. Protein translation options #21.
  • Display of translated proteins in the ABI editor.
  • DNA sequence editor option to display translated proteins.
  • Export to Fasta, possibility to select multiple fields, right click, Select all highlighted fields.
  • Gel algorithms reviewed and improved.
 
  • Manual Version 24.8 - October 2024
  • User management:
  • Reset password recurrence. Only accessible by users that are part of the Super administrators group.
  • In user's properties form, checkbox to force user to reset password at first login. Note that users will no longer be able to reuse previously used passwords (any).
  • Minor bug fix in import, when wrong value is provided then now the specific cell will be highlighted indicating the value is wrong and needs to be corrected before proceeding the import.
  • Stock management: options to zoom in and zoom out when a box is opened.
  • In grid, when records are filtered, and a new field is being added to the grid, then the filtered list remains as it was before dragging.
  • Minor bug fix when searching on link fields.
 
  • Manual Version 24.7 - September 2024
  • Minor bug fixes.
 
  • Manual Version 24.6 - July 2024
  • Minor bug fixes.
  • Download genome based on accession numbers improved.
  • Message added when Download genome tool starts from a table that does not contain an Flink field.
  • History on link field records improved. Now it shows the history of links itself, not the data in the linked record.
  • Issue on sorting of templates based on date, name or type fixed.
  • Issue on extending U field value in grid fixed.
  • Issue on display of summary at second level or more fixed.
 
  • Manual Version 24.5 - May 2024
  • Gel analysis tool improved.
  • In last step (Results) of the gel wizard:
  • Button 'Try match' tries to match the lane names with the record names.
  • It is possible to paste a list of record names from clipboard in the 'profile to export' list on the left.
  • New algorithms added to Band detection step.
 
  • Manual Version 24.4.1 - March 2024
  • New functions in first step of the wizard in Download genomes tool.
  • "=MATRIXFITTING" Formula added to be used to compare matrices (KMER clustering)
  • In clustering (clutsering tree and MDS) a new option is added to provide a title. This text will be visible on top of the clustering tree (tab name) as well as at the bottom of the matrix grid (sheet name).
  • Similarity matrix: Details of the matrix (summary) are displayed in a cell just under the matrix.
  • Group settings: Usergroup ID 63 is now reserved for the Super Administrators group.
  • Data export: sections for new templates and existing templates are swapped from position.
  • Gel analysis tool improved.
  • .tiff files now also accepted as gel picture format.
  • Colors of the lines in the interpolate step are adapted to make it more clear even when having many marker bands.
  • In the step Band detection, the code behind has been adapted slightly to make sure that less unwanted bands are detected at the most top and most bottom of each lane. The available parameters in the ribbon can still be used to adapt to the current gel in the analysis.
  • Send record to other table now has the option to replace the data (besides the merge option).
 
  • Manual Version 24.3 - February 2024
  • Login in BioloMICS using email address (not user name anymore)
  • Start/Login screen BioloMICS now shows extra information (version number, time after last publish, link to desktop manual).
  • In the Pictures gallery, button 'Open path of selected file'.
  • New movie added showing the download of NCBI genomes and KMER clustering.
     
 
  • Manual Version 24.2 - January 2024
  • Genomes:
  • Download genomes directly from NCBI. Button in Molecular Tools tab in the ribbon.
  • Perform a KMER clustering on genomes. Button in Analytics tab in the ribbon.
 
  • Manual Version 24.1 - January 2024
  • New statistics tool: Statistics on fields.
  • Export tool has been adapted to make it compatible with the export tool in the web version.
  • Separation between new templates and existing templates.
  • Direct selection of exporting format.
  • No need to select the fields in the wizard anymore, they are directly available from the reporting tool.
  • 2 new movies were added to explain the new reporting function (for pdf and label).
  • In Field management, new option to filter on groups.
  • Field types S and M will be 2 values: minimum-maximum (instead of 4: minimum-low percentile-high percentile-maximum).
  • Table management, SQL name of the table is now predefined and cannot be manually changed.
  • Security documents reviewed and minor adaptations made:
  • Privacy Policy
    - Review date has been added at the end of the document.
  • GDPR
    - Review date has been added at the end of the document.
  • BioAware Trust Center
    - Review date has been added at the end of the document.
  • Terms of Service
    - In section "14. Definitions" Citrix has been replaced by "Remote desktop"
    - Review date has been added at the end of the document.
  • Terms of Use
    - In section "Privacy and security", the link to Privacy policy was not working properly, this is linking to the right place now.
    - In section "Privacy and security", the link to our website was missing the "-" and this has now been corrected.
    - In section "Disclaimer" there was written "The website are", this has been corrected to "The website is".
    - Review date has been added at the end of the document
  • Protocol for reporting > Ticketing system
    - Adaptations made according to current look
 
 
 
  • Manual Version 23.1.5 - August 2023
  • Import CSV file: UTF8 encoded text files are accepted.
 
  • Manual Version 23.1.4 - June 2023
  • Pearson algorithm adapted for G field and W field.
 
 
  • Manual Version 23.1.2 - April 2023
  • Stock management, Storage devices selection (#8) now using tree structure instead of dropdown fields.
  • Global search has been removed from the desktop version.
  • New button in last step of Gel tool to Remove extrapolated bands.
 
 
  • Manual Version 22.1.6 - December 2022
  • Lost link to movie has been placed back.
  • Importing in date field requires the year to be included when month and day are to be imported.
  • When 2 digits are provided for the year then it is considered in the years 2000.
  • Preformatted tables, MIRRI structure has 2 changes:
  • GMO field is now type V (dropdown).
  • Full reference field in Bibliography table is now type E (Text).
  • In the Gel tool, 2 new functionalities are added:
  • ROI (Region of interest) can now move all 4 corners.
  • Automatic inversion option.
  • Admins can now also access the trigger section (previously only the Superadmins).
  • Stock management new button: Select stock for order.
 
  • Manual Version 22.1.5 - September 2022
  • The Manual for the Desktop version and the Web version are split
  • This manual is explaining the desktop version of BioloMICS only
  • The Web manual can be found here.
 
  • Manual Version 22.1.4 - July 2022
  • When importing data in a Date (H) field and the year is written with 2 digits, then it is considered in the years 2000. If it is meant to be in the years 1900 then the 4 digit value of the year will need to be used.
  • Ontology (O) field now be selected in the advanced settings of the Summary (Y) field in the field settings.
  • Ontology (O) field advanced settings: properties option has been removed. Level of display remains.
  • When adding the preformatted tables of MIRRI, 2 extra fields are included: GMO (V field) in the Strains table and Full reference (E/Text field) in the Bibliography table.
 
  • Manual Version 22.1.4 - July 2022
  • Two extra algorithms for the Ontology field. Now there are three algorithms available
  • Classification algorithm (Similarity=common values/longuest path)
  • Proportional identification algorithm (Similarity=common values/shortest path)
  • Identification algorithm (Similarity=presence of most detailed source value in path of reference)
 
  • Manual Version 22.1.3 - April 2022
  • Minimum length setting for E field removed.
  • Comments can now be added to fields and on links.
  • Suggestions uses now a green ball as indicator that there is a suggestion for the current record.
  • In the tree, the name of the field is now displayed before the field code.
     
     
  • Manual Version 22.1.2 - January 2022
  • Stock management locked records cannot be updated in the stock tool, a warning will be shown and the record needs to be unlocked first.
  • Automatically replace the synlink fields to the currently accepted name with right click button "Update current name for selected record(s)"
 
  • Manual Version 22.1 - January 2022
  • Stock management new button to show (or hide) empty storage for selected strain.
 
  • Manual Version 21.6 - December 2021
  • Stock management gif movies added to illustrate the options better.
  • New gif movies added to Records chapter.
 
  • Manual Version 21.5 - October 2021
  • Stock management search can now be based on Starts with and contains.
  • Stock management edit selected batch shows the batch as a record in the grid in the main window of BioloMICS.
  • Stock management option to view and print a picking list (and reduce stock automatically).
  • Importation tool: all warnings and issues are saved into clipboard.
  • Number of user groups increased from 32 to 62.
 
  • Manual Version 21.4 - July 2021
  • New movie Dashboard elements explaining the Sunburst and Sankey.
 
 
  • Manual Version 21.2 - May 2021
  • Buttons regarding dereplication tool moved their position to the right in the Other Tools tab in the ribbon.
  • New movie available for dereplication tool.
 
 
  • Manual Version 20.3 - December 2020
  • BioloMICS web version improved.
     
  • Manual Version 20.2 - October 2020
  • BioloMICS web version 20 documentation added to this manual.
  • Web edition button in desktop version removed from Other Tools tab in ribbon. Website will be managed through the web.
  • Stock management now available as a plugin in BioloMICS, to be found in the Other Tools tab.
  • H field algorithm 0 line added to compute the similarity in the identification and classification tools.
  • MIRRI database added to preformatted tables.
 
  • Manual Version 20.1 - July 2020
  • New BioloMICS version numbering from now on. Based on date of publish. 20.6.22.168 was published on June 22nd, 2020. Numbering on this manual is not linked to the version numbering of BioloMICS.
  • Options: Track my activity defines if your activities will be tracked in the login system and if an email will be sent to you when opening a database.
  • Edit linked records has now a search option available.
  • Right click option on link fields in the tree has now the option to add or replace the opened records in the linked table. Counts for all link field types.
  • Identification and classification tool grid options computed and displayed.
  • Identification results, new option to add/display extra fields to the lower grid.
  • Gel analysis tool: exact match search when importing gel data.
  • Ontology viewer: Delete record button removed; Two extra buttons to open and close all folders.
  • In the Page layout tab, the buttons for the print settings are removed, these settings can now be set in the Backstage section, Print.
  • The icon of the i field (integer) has been changed to .
  • Report designer functionality improved.
 
 
  • Manual Version 12.1.12 - January 2020
  • Annotations have been renamed to Suggestions. The functionality of the tool has not changes.
  • New option: Unlock configuration. During modifications, the configuration tables and records may be temporary locked. After a computer crash or a network shutdown, some records may remain locked forever, as BioloMICS could not unlock them. To unlock all records, click this button.
  • New button "Allow Edition" in Clustering tree and MDS. This button allows updating data in the database from the analysis tool directly.
  • Searching in a number field for a given range, use " ... "
  • Save and load queries from cloud.
  • Molecular view tool to visualize molecular structures.
 
 
  • Manual Version 12.1.10 - November 2019
  • Schema overview reviewed and updated.
 
 
 
  • Manual Version 12.0.1 - Feb 2019
In BioloMICS version 12 we have introduced new features and improved functionalities.
  • When you login into BioloMICS desktop an email will be sent to the registered email address of the user.
  • New field types have been introduced: ALink, CLink, DLink, HLink, ILink, KLink, MLink, SLink, TLink, VLink.
  • New analysis tool to display and analyze Maldi-Tof data - [Spectral Analysis]
  • New comparison algorithms for W and WLink fields for Maldi-Tof tool.
  • Identification tool has been reviewed and made more straightforward, including new algorithms for all link fields (best, worst, average).
  • Clustering tool has been reviewed and made more straightforward, option to export to newick format has been removed.
  • Search panel does now keep 20 queries in memory.
  • Thirty-nine new formulas introduced. Thirty 38 based on Microsoft Excel and one specific for BioloMICS (FIELDSAVE)  to update a given record based on other data: =fieldsave("No", A3, "v6693").
  • In the importation tool, when one wants to merge but this is not possible then a message appears asking to continue or not.
  • [Global Search] tool can be activated now and used to search fast through multiple tables. To activate, the Crawler takes the data from the MySQL database and 'stores' it in a MongoDB database. The Finder is used to retrieve the data from the MongoDB database. It only uses data from fields that are indexed. Field types that can be indexed are E, T and V.
  • In the backstage section, in Print the place to select the template is moved from the bottom to the top
  • The buttons in the ribbons on the main window have been reviewed.
  • The following buttons are moved from the Other Tools tab to the Home tab: Table View (Open Table View), Global Search, History, Spreadsheet (Open Spreadsheet), Word Document (Open Word Processor) and Cloud Folders (Cloud viewer).
  • [GIS Maps] button in the Other Tools tab has been removed, maps can be opened through right-click on the grid: View on map.
  • [Graphic Viewer] button to show W field graphs.
  • In the Options a new option has been added:
  • Max number of target records loaded in queries The maximum number of linked records loaded when running queries on a target table (default 100000).
  • In the Options 2 options have been removed:
  • Alternate row colors in grid.
  • Automatic opening pictures gallery when double click on pictures Double click on a picture will open the picture gallery.
  • MicrosoftSQL available as database backend.
  • Annotation button has been moved from the tab Other Tools to the Date tab.
  • New instruction movies for version 12 added for the main features.
 
(c) BioAware, 2024