×

BioloMICS menu

Search

Results automated curation explained

Results of the automated curation tool are stored in separate HTML files.

The location of those files are provided in the Path to store results (#13 of One field curation)

Results automated curation explained

The title is showing the specific item the records were grouped by (#1 of One field curation and #1 of Multiple field curation).

In this case we group by taxon name.

This section will be present when it has been check in the wizard (#8 of One field curation and #8 of Multiple field curation).

Same results as provided in the wizard grid (step 7 of One field curation and step 7 of Multiple field curation)

Statistics can be copied to clipboard using the provided link.

This section will be present when it has been check in the wizard (#8 of One field curation and #8 of Multiple field curation).

Shows which strains are in which cluster.

Cluster details can be copied to clipboard using the provided link.

Minimum similarity to initiate a new cluster has been set in the wizard (#10 of One field curation and #10 of Multiple field curation).
Minimum number of record(s) to initiate a new cluster as set in the wizard (#11 of One field curation and #11 of Multiple field curation).
The red dot behind the strain is indicating that it is the Medoid of the current group (Species in this case).

This section will be present when it has been check in the wizard (#3 of One field curation and #3 of Multiple field curation).

The red dot behind the strain is indicating that it is the Medoid of the current group.
First column(s) of squares shows the field selected in (step 5 of One field curation and step 5 of Multiple field curation) in this case the ITS sequence from the one field curation.
Second and third column of squared show the fields selected in (#5 of One field curation and #5 of Multiple field curation).
Note if more fields were selected, then more columns are present in the tree. One column per field.
Last column of squares show the cluster, all records in 1 cluster are having the same color.
When an address was provided in the wizard (#2 of One field curation and #2 of Multiple field curation) then this will be a link to display more information.

This section will be present when it has been check in the wizard (#7 of One field curation and #7 of Multiple field curation).

Shows the similarity matrix between the items in the comparison (sequences in this case)

The red dot behind the strain is indicating that it is the Medoid of the current group.
The color of the square is indicating the cluster.

This section will be present when it has been check in the wizard (#12 of One field curation and #12 of Multiple field curation).

Shows the percentage of similarity on the x-axis and the number of items on the y-axis.

Below here for example there is 1 item (in this case 1 sequence) found with a similarity between 90% and 91.999%.

This section will be present when it has been check in the wizard (#6 of One field curation and #6 of Multiple field curation).

Shows the different clusters, each having its own color.

The plot can be turned by using the mouse.

Hover the mouse on a dot to see more details.

(c) BioAware, 2025